input files

1. check list
b2ag
b2ar
b2ai
b2ah

b2.boundary.parameters
b2.neutrals.parameters
b2.numerics.parameters
b2.transport.parameters

b2mn.dat
b2.transport.inputfiles
SLURM

lns

1. 创建.dg、.dgo、.str、.trg、.equ与dg.和param.dg以及uinp.*之间的软连接

triang

1. AMJUEL等，创建本地case与数据库的软连接
1. fort.21~trim.dat
1. fort.22~marlow.dat
1. fort.3 ~1.000 1.000
1. fort.30: geometry from B2
1. fort.33~DEVICE.tria.xxx.nodes
1. fort.34~DEVICE.tria.xxx.cells
1. fort.35~DEVICE.tria.xxx.links
1. fort.78:eirene boundary
1. forr.85:
  
  image.png
1. input.dat~input.eir
  
  image.png

W-target

1. 关闭W溅射
1. 关闭喷气

1. 降低背景杂质粒子的浓度（1e16 .or.1e12 ~ 1e5）

1. 先用不考虑溅射和Ar喷气的情况下，纯D跑出背景等离子体
1. 对于SLURM脚本，经验（4 核16G 8核 20G）supported by WYL
6。查看申请的资源是否合适：ssh noden ；htop； cheek the sweep； F10;exit support by ZXL

一个case的创建过程

1. dg设置
1. save and output
1. lns （创建dg相关的链接）

#! /usr/bin/env ksh

#  VERSION : 05.03.98 19:38

[ "$1" = '' ] && { \
    echo "Usage: lns <Varid>"
    echo "        This will link the files to the Sonnet directory:"
    echo "                <Varid>.str --> struct.snn"
    echo "                <Varid>.trg --> targets.snn"
    echo "           equilibrium file --> equilibr.snn"
    echo "        to the Carre directory:"
    echo "                <Varid>.str --> dg.str"
    echo "                <Varid>.trg --> dg.trg"
    echo "                <Varid>.dgo --> dg.dgo"
    echo "           equilibrium file --> dg.equ"
    echo "        to the uinp directory:"
    echo "                <Varid>.dgo --> uinput.dg"
    echo "                <Varid>.trg --> uinput.trg"
    echo "        and to the baserun directory:"
    echo "                <Varid>.dgo --> param.dg"
    exit 4
}


[ "$DEVICE" = '' ] && {
  print -u2 -n -- "No DEVICE selected. Please provide a device name\n "
  read u
  export DEVICE=$u
}
[ "$SOLPS_CENTRAL" = 'yes' ] && DEVICE=$DEVICE/$USER

CLASSDIR=${DG}/device/$DEVICE
[ -d "$CLASSDIR" ] || {
  print -u2 -n -- "The directory $CLASSDIR does not exist. Create it? (y/n) "
  while true; do {
    read u
    { case $u in
       (y|Y) mkdir -p "$CLASSDIR" || {
             print -u2 -- "Unable to create the directory. Check the permissions in ${CLASSDIR}%/*"
             break 2
             }; break;;
       (n|N) break 2;;
       ( * ) print -u2 -n -- "Please answer with either y or n: ";;
      esac; }
    }; done
  }

ln -sf `pwd`/"$1".str ${DG}/device/$DEVICE/struct.snn
ln -sf `pwd`/"$1".trg ${DG}/device/$DEVICE/targets.snn
ln -sf `pwd`/"$1".dgo uinput.dg
ln -sf `pwd`/"$1".trg uinput.trg
ln -sf `pwd`/"$1".str dg.str
ln -sf `pwd`/"$1".trg dg.trg
ln -sf `pwd`/"$1".dgo dg.dgo
ln -sf `pwd`/"$1".dgo param.dg

e=`cat $1.trg | grep '# equil' | cut -f3 -d' '`

# check in case we are doing a limiter configuration
# and must fetch the real equilibrium from the .dgo file
typeset -i z
NAME=/tmp/lns.$USER.`date +%Y%m%d%H%M%S`
cat $1.dgo | grep 'lm_equ' | wc -l > $NAME
z=`cat $NAME`
[ $z -gt 0 ] && {
  l=`cat $1.dgo | grep 'lm_equ' | cut -f4 -d' '`
  [ -s $l ] && {
    echo Linking to limiter equilibrium $l
    e=$l
  } || {
    echo Limiter equilibrium file $l not found!
  }
}
rm $NAME

case $e in
  ( ''   ) echo "$1.trg is in old format - no information on the equilibrium there"
           [ -r default.equ ] && { \
               ln -sf `pwd`/default.equ ${DG}/device/$DEVICE/equilibr.snn
               ln -sf `pwd`/default.equ dg.equ
                    echo '-- the default equilibrium file is used';
           } || echo '*** No default equilibrium file found (!!!)';;
  ( /*   ) ln -sf $e ${DG}/device/$DEVICE/equilibr.snn
           ln -sf $e dg.equ;;
  ( ../* ) (d=`dirname $e`; f=`basename $e`; cd $d;
           ln -sf `pwd`/$f ${DG}/device/$DEVICE/equilibr.snn
           ln -sf `pwd`/$f dg.equ);;
  ( ./*  ) (d=`dirname $e`; f=`basename $e`; cd $d;
           ln -sf `pwd`/$f ${DG}/device/$DEVICE/equilibr.snn
           ln -sf `pwd`/$f dg.equ);;
  (   *  ) ln -sf `pwd`/$e ${DG}/device/$DEVICE/equilibr.snn
           ln -sf `pwd`/$e dg.equ;;
esac