python22

# -*- coding: utf-8 -*-

import os
import sys

infile=sys.argv[1]
outfile=sys.argv[2]

outcon=open(outfile,'w')

with open(infile,'r') as i:
    li=i.readlines()
    for lin in li:
        line=lin.strip().split("\t")
        outcon.write(line[0])
        for linei in line[4:7]:
            print(linei)
            outcon.write("\t"+str(linei))
        for liney in line[1:4]: 
            print(liney)
            outcon.write("\t"+str(liney))
        outcon.write("\n")

#!/usr/bin/env python

fpkm_new=open('new.fpkm.txt','w')

with open('fpkm.txt','r') as f:
    fi = f.readlines()
    head=fi[0]
    fpkm_new.write(head)
    for fil in fi[1:]:
        lincon=""
        fili=fil.strip().split("\t")
        ID=fili[0]
        idtran=ID.upper()
        lincon=lincon+idtran
        for IDi in fili[1:]:
            lincon=lincon+"\t"+IDi
        fpkm_new.write(lincon+"\n")