压缩+改名（2）

for i in `cat doc`
do
        path=`echo -e $i`
        echo cd ${path} >>del01.sh
        echo "ls *.fastq | awk '{print \"gzip \"\$0}' | sh" >>del01.sh
done

进入多个目录

压缩成gz格式

for i in `ls *.fastq.gz`
do
        sample_name=`echo $i | awk -F "_" '{print $1}'`
        index_seq=`echo $i | awk -F "-" '{print $3"-"$4}' | awk -F "_" '{print $1}'`
        lane_name=`echo $i | awk -F "_" '{print $4}' | awk -F "L" '{print $NF}' `
        read_id=`echo $i | awk -F "_" '{print $5}'`
        name_id=`echo $i | awk -F "_" '{print $NF}'`
        #echo ${sample_name} ${index_seq} ${lane_name} ${read_id} ${name_id}
        mv $i ${sample_name}_${index_seq}_L00${lane_name}_R${read_id}_${name_id}
done

按照 规则 改名