2022-11-28_AS rmats2sashimiplot

rmats2sashimiplot的github
https://github.com/Xinglab/rmats2sashimiplot

git clone https://github.com/Xinglab/rmats2sashimiplot.git
cd rmats2sashimiplot

因为我的python不是2.7的，所以提前需要运行

bash  2to3.sh
python ./setup.py install
rmats2sashimiplot

16:22:59 jiarongf@222.197.214.27:/data1/jiarongf/software/rmats2sashimiplot
$
rmats2sashimiplot
usage: rmats2sashimiplot [-h] -o OUT_DIR [--l1 L1] [--l2 L2]
                         [-t {SE,A5SS,A3SS,MXE,RI}] [-e EVENTS_FILE]
                         [-c COORDINATE] [--s1 S1] [--s2 S2] [--b1 B1]
                         [--b2 B2] [--exon_s EXON_S] [--intron_s INTRON_S]
                         [--group-info GROUP_INFO] [--min-counts MIN_COUNTS]
                         [--color COLOR] [--font-size FONT_SIZE]
                         [--fig-height FIG_HEIGHT] [--fig-width FIG_WIDTH]
                         [--hide-number] [--no-text-background]
                         [--keep-event-chr-prefix] [--remove-event-chr-prefix]
rmats2sashimiplot: error: the following arguments are required: -o

这样就安装好了